species:   Artha
pid:       MI0001019
parent:    ath-MIR398c
paralog:   
locus:     5:4694694-4694808
matures:   ['UGUGUUCUCAGGUCACCCCUG', 'GGGUUGAUAUGAGAACACACG']
srr:       SRR9216049
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216049.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216049.cram 5:4694694-4694808

0 out of bounds
5 alignments
3 proper strand
3 stranded perfect matches

          ***********************                                                 ***********************          
UGGAUCUCGACAGGGUUGAUAUGAGAACACACGAGCAAUCAACGGCUAUAACGACGCUACGUCAUUGUUACAGCUCUCGUUUCAUGUGUUCUCAGGUCACCCCUGCUGAGCUCUU
.(((.((((.(((((.((((.((((((((((((((........((((.((((((((...))))...)))).))))))))).....))))))))).)))).))))).)))).))).
------------------------------------------------------------------------------------UGUGUUCUCAGGUCACCCCUG---------- l=21 a=2 c
------------GGGUUGAUAUGAGAACACACG---------------------------------------------------------------------------------- l=21 a=1 c*
------------------------------------------------------------------------------------UGUGUUCUCAGGUCACCCCUG---------- l=21 a=2 ma
------------GGGUUGAUAUGAGAACACACG---------------------------------------------------------------------------------- l=21 a=1 ma*

------------GGGUUGAUAUGAGAACACACG---------------------------------------------------------------------------------- l=21 a=1 (c*,ma*)
------------------------------------------------------------------------------------UGUGUUCUCAGGUCACCCCUG---------- l=21 a=2 (c,ma)

mb-01111
ax-1111011
ku-01
ss-111110111111
fn-001
